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| Strain Number: | UAMH 11012 |
|---|---|
| Species Name: | Phialocephala subalpina |
| Type: | |
| Synonyms: | |
| Taxonomy: | FUNGI Ascomycota, Leotiomycetes, Helotiales, Mollisiaceae |
| Strain History: | Grünig, C.R. (6 70 1) -> UAMH |
| Substrate: | fine root of Picea abies (Norway spruce) | Location: | SWITZERLAND Bodmerenwald (GEO: 46.972,8.835) |
| Isolator: | C.R. Grünig |
| Isolation Date: | 2003-09-10 |
| Date Received: | 2009-03-30 |
| Characters: | MOLECULAR SYSTEMATICS dark septate endophyte (DSE) // MOLECULAR SYSTEMATICS Form taxon cryptic species CSP6 // MOLECULAR SYSTEMATICS Microsatellite markers for Phialocephala subalpina and P. fortinii - Queloz V, Duo A, Gruenig CR, Molecular Ecology Resources 8:1322-1325, 2008 // MOLECULAR SYSTEMATICS mitochondrial genome evolution in species within the Phialocephala fortinii complex - Duo A, Bruggmann R, Zoller S, Bernt M, Gruenig CR, BMC Genomics 13:166-182, 2012 // MOLECULAR SYSTEMATICS Population genetic analysis of Phialocephala fortinii sensu lato - Gruenig CR, Duo A, Sieber TN, Fung Gen Biol 43:410-421, 2006 // MOLECULAR SYSTEMATICS Population genetic analysis of the Phialocephala fortinii complex // MOLECULAR SYSTEMATICS Species recognition within Phialocephala fortinii complex - Gruenig CR, Duo A, Sieber TN, Holdenrieder O, Mycologia 100:47-67, 2008 |
| Compounds: | |
| Cross Reference: | |
| Pathogenic Potential: | Human: no | Animal: no | Plant: yes |
| Biosafety Risk Group: | RG1 (check the PHAC ePATHogen Risk Group Database for updates) |
| Regulatory Requirements: | Canadian requesters must provide PHAC Pathogen and Toxin License Number (see: https://www.canada.ca/en/public-health/services/laboratory-biosafety-biosecurity/licensing-program.html) prior to shipment. International requesters must provide all legally required importation documentation prior to shipment. Plant pathogenicity status may be verified by using the USDA Agricultural Research Service (ARS) Fungal Database |
| MycoBank ID: | 499671 |
| Sequences: | >UAMH11012_DQ274821_beta-tubulin ACATCTGCATGAGAACTCTCAAGCTCTCCAACCCCTCTTACGGAGATCTCAACCACTTGGTCTCTGCCGTCATGTCGGGTGTCACTACCTGTCTCCGTTTCCCGGGTCAACTCAACTCTGATCTCCGAAAGTTGGCCGTCAACATGGTTCCCTTCCCTCGTCTCCATTTCTTCATGGTTGGCTTCGCTCCTCTTACCAGCCGTGGTGCTCACTCTTTCCGTGCCGTCACGGTCCCAGAGTTGACCCAGCAAATGTATGACCCAAAGAACATGATGGCTGCCTCCGATTTCCGTAACGGTCGTTACCTGACCTGCTCTGCTATCTTGTAAGTCTTCATAGCTCAATTTTGATGCCGCATGCTAACTTCTTCCAGCCGTGGTAAGGTCTCCATGAAGGAGGTTGAGGACCAAATGCGCAATGTTCAGAACAAGAACTCCTCCTACTTCGTCGAGTGGATTCCCAACAACGTCCAAACCGCACTCTGCTCCATTCCACCACGTGGCCTCAAGATGTCTTCCACATTCGTCGGAAACTCAACCTCCATCCAAGAGCTCTTCAAGCGTGTTGGTGACCAGTTCACTGCC >UAMH11012_DQ274555_elongation factor-1 alpha CTCGGTGGGGTAAAATCCTTCGCCTCGCACAACAAATTTTTGCGCCCGTGCCATCGTCACGACAACATCATGATTGATGCCCAACGCACATACCCTTTCACAACACCCATACTTTTGCATAACACACAATGTCTTCGATAACATTGCTGACCCTTTCGATAGGAAGCCGCCGAGTTGGGCAAGGGTTCTTTCAAGTACGCATGGGTTCTTGACAAGCTAAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCTCTCTGGAAGTTCGAGACCCCAAAGTACTATGTCACCGTCATTGGTATGTCTTCGCAGATGCGTCGCATCATCTTCCCTGCTAACACCTCGCAGATGCTCCCGGTCACCGTGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCCGATTGCGCTATTCTCATCATTGCTGCCGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACTCGTGAGCACGCCCTCCTCGCCTACACCCTTGGTGTCAAGCAACTCATCGTCGCCATCAACAAGATGGACACCACCAAGTGGTCCGAGGCTCGTTACCAGGAAATC >UAMH11012_FJ418237_microsatellite CCTCCGCTATAGATGCAACAATTAGTGCTATTATCAGCAAGGCAGAGGCTGACGACGACGACGACGACGGGGAGAACAATGCCGAAAAGGCGGCCAAGGATGCAATGAAGGCCACTCAAACCAAAGCTACTCAGGATGGC >UAMH11012_FJ418266_microsatellite CCTAGAAGGGTGGTGGGTTTAACCTTCTTCTTCTTGGACCTCTTGCGCTTCTTTTTCTTTTCTGAAACAGTAGTGAGTAAAATGGTAGAAAGTTCGGTCAATATCAAAGAGATATTTATGTTTTGTCTTACCAGCATCGGGAGCAGAGGCACTTATGGCGGGAGTAGCTCCTTCCTTCTCATCGTCGTCATCATCGTCGTCGTCGTTGCTGACGATACCACGATC >UAMH11012_FJ418302_microsatellite CGAGATAGTCCGGGACAGAAGCTCTGCTTGCATGGCATAGCCATCCTGAATAGCTTTGGTTTGAGTGGCCTTCATTGCATCCTTGGCCGCCTTTTCGGCATTGTTCTCCCCGTCGTCGTCGTCGTCGTCAGCCTCTGCCTTGCTGATAATAGCACTAATTGTTGCATCTATAGCGG >UAMH11012_FJ418359_microsatellite CGGTTACGATGTCACTGCACACGGCCGCGGTTCGTGTGTGTGTGCGTGTGCGTGTGTGTGTGTGTGTTTGGTTTGTTCGCACGCTGAGTGAACCGAGGATC >UAMH11012_FJ418397_microsatellite GCTTTCACATCACCATCCAGAGAATTGACGAGAAAGTCACGGGGAGAGAGAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAAACAGACAGACAGAGAGAAATAGCAGAGAGAAAGAGAATCAAGTCGCAGCCAGCGGGCATGCTTGCAAGGTACGAAACTCGCAACCAACTCACC >UAMH11012_FJ418437_microsatellite GCTGTTGGACTCGGTTATGGATTTAATTGAATCATTCAAGGGCTTTCCCTGCATCCCAAGTGCTATTATTCCAAGTACCCATTTAATATATCCCGTTCAGCTTGCGAAGAATAGTGTATGCTGGCGCCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTGGAAGGTCGCTCCATGCGTTTCATACAAATGCCATACAATCTGCTCGCATT >UAMH11012_FJ418463_microsatellite TCCAGCATCACACTTTCCAGTATCTTAGAAGCCCGCTTCTCATTCCGTGCCGGTATAGCAGGCGGTGCCCTGACAACCTTCTTCGGCCTCCCTCTGTGTACAACTGAACCCTCCATATCGCTACTCAAACACTCGTCGTCGTCGTCGTCGTATTCCTGAAAATCCTCGTACCCAGAATCCTTCTCTTCCCTCAATCGACCTTCCTTCTGCTGATGTTGATGTTGAGAATGGAGAGAAGCCACG >UAMH11012_FJ418489_microsatellite ATTGCGGACTGTTGAGAGGAAGGCTTAAATAGAGTGGTACTAGGAAGTGTGGTGTGTGGTGTGTGGTGTGTGGTGTGTGGTGTGTGGTGTGTGGTGTGTGGTGTGTGGTGTGTGGTGTGTGTGTGGTGAAGAAAGGCAGAAGAAAAAGAGGACGAGAGAGATATTTTGAAAGGGAAATTGGTGGGAAGCTAATGTTGGGGTGGA >UAMH11012_FJ418525_microsatellite GGGGCATAAACCCTCACTTTCAATTCCACACACAAACACACACACACACACACACACACACACGTACGCACACAGAAAGTAAACCTTAAAGAAAGTAACTACTGTATACTCCCAAGTACACATAGTCGCTTAAGAACCTCTCTCAACCGGC >UAMH11012_DQ274671_RFLP probe ACATTTTGGCAATGGACCTCCCAGCGGGCCTGCAGGTGGAAGAGGCTTTGGCACACCTGGTGATAGAGATAGGAGGGGTATCGGAAGTGGACCGGGGAGTTTAGGACCGCCACCGCAGAGCTTGAATAAGAAGAGGACTTTTGATGGATTCCAGCAGAGCTCGAGCAAAGACGACAGAGGTCGGTTGGCTTTCGATGATTACGAGCGTGAGGAGAGACCACCGAAGCGCGCATTTAATACCTCGGATGATGAAGACGAGAGAGCTGGCAGTGGTGGTAGGGAGGAGGACAAGGCTGTTGCGAAGCCGACTCTGAGACTTGCTTCTCTTCCACCAGGCACGTCGCCTGCTGTTATTAAGGCTCTGCTTCCTAGCAATTTGACGGTTGATGCGGTCAGGATATTACCACCTTCTGGACCAGGCGTATACATGGAGAGGAAGAGCATGTCAGCAATCGTCACTTTGGCAAAGGACACAGCTGCGAACGATATCGATGCTGCTGTCAATGGGCTACAGAACAAGTATCTAGGGTATGGCTACTATCTCAATCTTCATCGACATCTGTCTTCAGCAGCAATATCGAACTCCGCATCTGTTCCAGCTCTTGGTACTTCAATGGCTTCACAGCCCTTCGGAGCCAAGCAAGTCGACATAGCA >UAMH11012_DQ274746_RFLP probe CCAACGCTTCGGCAGGACTGCCCATTGAATATTTCTCGCCAGAGTTGAAAGGAGTTTCCTCAGGGTCGAGATCGAGTGAAGATTGTACTGGAAGGCCGAGCGTTGTGCTGGGATCGTTGTTATTGCGCGAGGACCGTTGCTGTTTCATTCGAAGATAGACGTGAAAATGGATGTGAGAAATGGATGCAATCAAAGGTGCTGGTATGTAGGTAACGAAAGCCTTGAGTCCGGAAAGGCTAGCCTCGTCTGCACCAGTCCCATTCCCCACAATGAAGGTATTGTACTCGAAGAAGATGCGGATAGCTTCGCTGTGAATCGCTTTGTTGACGTACAGGATGCTCCCTCTGGCATCTGAGAGGAGAAGCTCCTTGAAAGATCTGCGTCGCGGAGTCGCAATCAGTATCGGTTCCTTGTGGACGAGGAGAAGTCGATAAATTTGACTCCGTATTTCTGGCGGCACAGCCATCAGCATTCCCCCT |
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